Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139275333 - 139276912

Intron Length:

1580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

AAATTACTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CATCTTTTAAAT

Flanking Amino Acid:

RLRNDGKTCKRKNICKSVNH

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

1.2

30.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

0.4

63.6

Minor 5ss

43.2

-0.7

2.9

57.4

40.7

Minor BPS

59.9

0.39

1.4

71.31

39.5

Associated Gene:

Gene:

MATN2

Ensembl Gene ID:

ENSAPLG00000014019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040671

139254171 - 139335360

81190

ENSAPLT00000014656

139254171 - 139300283

46113

ENSAPLT00000025829

139254171 - 139335360

81190

ENSAPLT00000040029

139254171 - 139335360

81190

ENSAPLT00000025401

139254171 - 139335360

81190

ENSAPLT00000020971

139254171 - 139335360

81190

ENSAPLT00000035971

139254171 - 139335360

81190

ENSAPLT00000045349

139254171 - 139335360

81190

ENSAPLT00000019094

139254171 - 139335360

81190

ENSAPLT00000031224

139254171 - 139335360

81190

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139275333_139276912_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: