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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139277036_139279716_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139277036 - 139279716
Intron Length:
2681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATTTTTTAAAA
Flanking Amino Acid:
VINEDLKTCTRVDYCALSDH
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1.3
81.8
38.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.6
0.62
0.9
70.6
35.5
Minor 5ss
41.5
-0.9
3.1
58.6
39.2
Minor BPS
67.4
0.54
1.3
71.85
33.4

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020971
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000031224
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000025829
139254171 - 139335360
81190
ENSAPLT00000040671
139254171 - 139335360
81190
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190