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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139277036_139283672_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139277036 - 139283672
Intron Length:
6637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATTTTTTAAAA
Flanking Amino Acid:
RLNPDKKTCKRVDYCALSDH
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.6
0.62
0.9
70.6
35.5
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
67.4
0.54
1.3
71.85
33.4

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045349
139254171 - 139335360
81190