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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139279840_139283672_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
139279840 - 139283672
Intron Length:
3833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CACAAATCAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTTTCTTCAATT
Flanking Amino Acid:
RLNPDKKTCKRVDHCAESNH
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
51.2
0.03
1
44.1
35.9
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
70.2
0.71
1.5
83.73
37.9

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190
ENSAPLT00000020971
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000031224
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000025829
139254171 - 139335360
81190
ENSAPLT00000040671
139254171 - 139335360
81190