Gene Search

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

139293302 - 139297723

Intron Length:

4422

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTATGTTCT

5'SS Class:

weak_major

3'SS Sequence:

TTATGTCTTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

AACTTCATATCC

Flanking Amino Acid:

ILNADQKTCSTQDLCAVEKH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.46

1.1

68.2

37.5

Major BPS

78.6

0.71

79.6

32.9

Major PPT

0.65

0.9

74.1

36.4

Minor 5ss

0.14

2.3

73.4

36.6

Minor BPS

48.1

-0.1

1.8

58.48

40.2

Associated Gene:

Gene:

MATN2

Ensembl Gene ID:

ENSAPLG00000014019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020971

139254171 - 139335360

81190

ENSAPLT00000035971

139254171 - 139335360

81190

ENSAPLT00000019094

139254171 - 139335360

81190

ENSAPLT00000031224

139254171 - 139335360

81190

ENSAPLT00000045349

139254171 - 139335360

81190

ENSAPLT00000014656

139254171 - 139300283

46113

ENSAPLT00000025829

139254171 - 139335360

81190

ENSAPLT00000040671

139254171 - 139335360

81190

ENSAPLT00000025401

139254171 - 139335360

81190

ENSAPLT00000040029

139254171 - 139335360

81190

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139293302_139297723_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: