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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139297847_139300195_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139297847 - 139300195
Intron Length:
2349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AACCTCTTACTT
Flanking Amino Acid:
STPFAVSGAEVPHMCSIVEH
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.7
29.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
33.8
-1.8
3
42.5
44.5
Minor BPS
51.4
0.12
1.6
64.27
40.5

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014656
139254171 - 139300283
46113