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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139314291_139335161_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139314291 - 139335161
Intron Length:
20871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TCCTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CCCTCCTTTATT
Flanking Amino Acid:
SGSHEKKEPQILHPGMSLYF
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.4
0.8
0.8
80.7
29.7
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
61.6
0.45
1.7
71.23
46.1

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190
ENSAPLT00000020971
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000031224
139254171 - 139335360
81190
ENSAPLT00000045349
139254171 - 139335360
81190
ENSAPLT00000025829
139254171 - 139335360
81190
ENSAPLT00000040671
139254171 - 139335360
81190