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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139337833_139356828_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139337833 - 139356828
Intron Length:
18996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGACG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTTTAGAAAAT
Flanking Amino Acid:
LVYITTNDTAVLLPPYDDPV
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.4
43.6
Major BPS
70
0.5
1
67
39.8
Major PPT
85.5
0.8
0.7
80.6
24.7
Minor 5ss
33.1
-1.9
3.1
42
44.3
Minor BPS
44.4
-0.3
2.5
73.71
43.1

Associated Gene:

Gene:
LAPTM4B
Ensembl Gene ID:
ENSAPLG00000013874
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014459
139335772 - 139396174
60403