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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139356925_139363366_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139356925 - 139363366
Intron Length:
6442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATAATGATAACT
Flanking Amino Acid:
LFISIILAFKGYLISCVWNC
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
46.4
-0.2
2.2
68.83
41.6

Associated Gene:

Gene:
LAPTM4B
Ensembl Gene ID:
ENSAPLG00000013874
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014459
139335772 - 139396174
60403