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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139363466_139371859_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139363466 - 139371859
Intron Length:
8394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTAC
5'SS Class:
major
3'SS Sequence:
TTTGCTTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
STIQDYLRQLPSNFPYKEEI
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.5
31.4
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
81.1
0.7
0.9
76.8
37.3
Minor 5ss
40
-1.1
2.9
48.8
42.8
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
LAPTM4B
Ensembl Gene ID:
ENSAPLG00000013874
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014459
139335772 - 139396174
60403