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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139371983_139372651_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139371983 - 139372651
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
CAMATYGAYKQHAAWIIPFF
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.8
74.3
35.8
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
LAPTM4B
Ensembl Gene ID:
ENSAPLG00000013874
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014459
139335772 - 139396174
60403