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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139372726_139380033_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139372726 - 139380033
Intron Length:
7308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTTTCCTGCAAT
Flanking Amino Acid:
GGEFEFMDDANMCIATAISL
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.8
34.6
Major BPS
71.3
0.53
1
61.3
37
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
32.8
-2
2.7
40.4
39.1
Minor BPS
61.1
0.43
2.1
86.48
39

Associated Gene:

Gene:
LAPTM4B
Ensembl Gene ID:
ENSAPLG00000013874
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014459
139335772 - 139396174
60403