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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139380146_139395949_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139380146 - 139395949
Intron Length:
15804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTCTTCTCCACA
Flanking Amino Acid:
GTIILGVWYLIINSVVLLIL
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
84.5
0.78
0.7
80
25.6
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
54.3
0.13
2
70.77
41.8

Associated Gene:

Gene:
LAPTM4B
Ensembl Gene ID:
ENSAPLG00000013874
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014459
139335772 - 139396174
60403