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Intron Name: Anas_platyrhynchos_platyrhynchos_2_139411365_139412299_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139411365 - 139412299

Intron Length:

935

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTTAT

U12 Branch Point Sequence:

TCAGTTGTAACT

Flanking Amino Acid:

IKQNSVPPPQTKSEESWESP

Intron Amino Acid Position:

578

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

84.6

33.2

Major BPS

73.5

0.58

1.2

63.7

43.9

Major PPT

85.5

0.8

0.7

84.6

30.4

Minor 5ss

42.9

-0.8

2.9

41.2

Minor BPS

48.5

-0

2.1

67.23

44.3

Associated Gene:

Gene:

MTDH

Ensembl Gene ID:

ENSAPLG00000013199

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048026

139411294 - 139440565

29272

ENSAPLT00000020316

139411294 - 139440565

29272

ENSAPLT00000013776

139411294 - 139440565

29272