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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139412457_139415555_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139412457 - 139415555
Intron Length:
3099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAAAT
Flanking Amino Acid:
KTISTSEPAKPEEAPSLAVS
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.7
36.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.7
0.6
0.9
75.1
33.7
Minor 5ss
38.9
-1.2
3.6
54.8
49.4
Minor BPS
66.1
0.58
1.6
85.04
35.1

Associated Gene:

Gene:
MTDH
Ensembl Gene ID:
ENSAPLG00000013199
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048026
139411294 - 139440565
29272
ENSAPLT00000020316
139411294 - 139440565
29272
ENSAPLT00000013776
139411294 - 139440565
29272