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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139418260_139420244_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139418260 - 139420244
Intron Length:
1985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
TCAATTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATCTCTTCAATT
Flanking Amino Acid:
PPVDDEWSGLNGLSSADPSS
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.3
33.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
77.7
0.62
0.9
73.2
36.9
Minor 5ss
49.3
-0
2.3
62.4
36
Minor BPS
65.8
0.58
1.5
78.23
38.7

Associated Gene:

Gene:
MTDH
Ensembl Gene ID:
ENSAPLG00000013199
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048026
139411294 - 139440565
29272
ENSAPLT00000020316
139411294 - 139440565
29272
ENSAPLT00000013776
139411294 - 139440565
29272