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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139420344_139424726_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139420344 - 139424726
Intron Length:
4383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTATT
Flanking Amino Acid:
WKERSLFTPIGSNSEPVSQA
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84
0.77
0.8
77.9
30.4
Minor 5ss
45.7
-0.5
2.9
61.3
44.6
Minor BPS
62.9
0.49
1.9
83.69
36.7

Associated Gene:

Gene:
MTDH
Ensembl Gene ID:
ENSAPLG00000013199
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013776
139411294 - 139440565
29272