Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139422394_139424726_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139422394 - 139424726

Intron Length:

2333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCTAT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCCCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGAAG

U12 Branch Point Sequence:

CCTTCCCCCACA

Flanking Amino Acid:

WKERSLFTPIAAWNVDARIN

Intron Amino Acid Position:

370

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

76.7

34.9

Major BPS

45.3

-0.2

1.8

57.6

45.8

Major PPT

75.2

0.57

0.7

68.6

25.2

Minor 5ss

45.7

-0.5

2.9

61.3

44.6

Minor BPS

45.5

-0.3

2.3

59.96

45.8

Associated Gene:

Gene:

MTDH

Ensembl Gene ID:

ENSAPLG00000013199

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048026

139411294 - 139440565

29272

ENSAPLT00000020316

139411294 - 139440565

29272