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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139480127_139574666_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139480127 - 139574666
Intron Length:
94540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCGTGTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCGTGTTTAATA
Flanking Amino Acid:
VIADMEEMLPRNER*
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
79
0.72
1
69
38.9
Major PPT
69.4
0.44
1
65.6
39.9
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
59.2
0.28
1.8
66.12
41.6

Associated Gene:

Gene:
CPQ
Ensembl Gene ID:
ENSAPLG00000013098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044006
139480013 - 139705570
225558