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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139542832_139574666_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139542832 - 139574666
Intron Length:
31835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGATATTTGATT
Flanking Amino Acid:
VIADMEEMLPRGPRVRKSNK
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.3
0.77
0.8
81.5
35.9
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
59.1
0.37
1.5
73.27
37.6

Associated Gene:

Gene:
CPQ
Ensembl Gene ID:
ENSAPLG00000013098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040152
139542415 - 139705570
163156