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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139546434_139574666_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139546434 - 139574666
Intron Length:
28233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
VIADMEEMLPSGDLRHPLDK
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.5
0.98
0.7
92.4
26.2
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
CPQ
Ensembl Gene ID:
ENSAPLG00000013098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025619
139546385 - 139705570
159186