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Intron Name: Anas_platyrhynchos_platyrhynchos_2_139574824_139604484_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139574824 - 139604484

Intron Length:

29661

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGAATA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTCCGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATAAT

U12 Branch Point Sequence:

ATTCCTATAATG

Flanking Amino Acid:

INYWMRDGVPGASLRDDLSK

Intron Amino Acid Position:

417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

0.9

77.2

32.9

Major BPS

75.5

0.63

1.1

34.4

Major PPT

84.6

0.78

0.6

81.7

23.2

Minor 5ss

32.1

-2

41.3

44.8

Minor BPS

56.9

0.08

1.7

64.25

37.7

Associated Gene:

Gene:

CPQ

Ensembl Gene ID:

ENSAPLG00000013098

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025619

139546385 - 139705570

159186

ENSAPLT00000013642

139545983 - 139705570

159588

ENSAPLT00000044006

139480013 - 139705570

225558

ENSAPLT00000040152

139542415 - 139705570

163156

ENSAPLT00000027474

139566971 - 139714212

147242