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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139632147_139671426_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139632147 - 139671426
Intron Length:
39280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTCATAATT
Flanking Amino Acid:
EIVGNKYPEQIVLVSGHLDS
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.8
77.4
41.2
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
67.8
0.64
1.6
86.17
33.3

Associated Gene:

Gene:
CPQ
Ensembl Gene ID:
ENSAPLG00000013098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013642
139545983 - 139705570
159588
ENSAPLT00000040152
139542415 - 139705570
163156
ENSAPLT00000033031
139576799 - 139705570
128772
ENSAPLT00000027474
139566971 - 139714212
147242
ENSAPLT00000025619
139546385 - 139705570
159186
ENSAPLT00000044006
139480013 - 139705570
225558