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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139671635_139695227_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139671635 - 139695227
Intron Length:
23593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
IRSIASFSIDSPHTGWQNYQ
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85
0.79
0.7
81.8
29.9
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
CPQ
Ensembl Gene ID:
ENSAPLG00000013098
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013642
139545983 - 139705570
159588
ENSAPLT00000040152
139542415 - 139705570
163156
ENSAPLT00000033031
139576799 - 139705570
128772
ENSAPLT00000027474
139566971 - 139714212
147242
ENSAPLT00000025619
139546385 - 139705570
159186
ENSAPLT00000044006
139480013 - 139705570
225558