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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139736839_139738088_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139736839 - 139738088
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
NLFQRTEVLAAVIAGGVIGF
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
83
0.74
0.9
76.7
36.2
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
SDC2
Ensembl Gene ID:
ENSAPLG00000030427
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035574
139736594 - 139792678
56085