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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139739601_139746507_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139739601 - 139746507
Intron Length:
6907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
AGTCAATGAAAT
Flanking Amino Acid:
DDDYSSGSGSGAEEDEDSTV
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
85.1
0.79
0.8
77
37.3
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
44.1
-0.3
1.9
62.31
40

Associated Gene:

Gene:
SDC2
Ensembl Gene ID:
ENSAPLG00000030427
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035574
139736594 - 139792678
56085