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Intron Name: Anas_platyrhynchos_platyrhynchos_2_139746620_139792049_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139746620 - 139792049

Intron Length:

45430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

ATCTGTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

ATCTTTCTAACC

Flanking Amino Acid:

SFVACASGQPRADLTSDKDL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

68.7

38.1

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

81.7

0.71

0.9

41.6

Minor 5ss

27.1

-2.6

31.9

42.5

Minor BPS

58.8

0.26

1.6

68.61

37.1

Associated Gene:

Gene:

SDC2

Ensembl Gene ID:

ENSAPLG00000030427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035574

139736594 - 139792678

56085