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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139843739_139843862_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
139843739 - 139843862
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTAAAAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
KSKVTNGIGKKKALKKRMVK
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
74.4
35.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
54.7
0.11
1.2
55.9
41.5
Minor 5ss
34.5
-1.8
3
40.9
39.3
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
PTDSS1
Ensembl Gene ID:
ENSAPLG00000012776
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013338
139843651 - 139868313
24663