Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139852491_139854270_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139852491 - 139854270

Intron Length:

1780

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAGGTCTA

5'SS Class:

major

3'SS Sequence:

TCTCTTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAC

U12 Branch Point Sequence:

CTTGTCTTCACT

Flanking Amino Acid:

EMRTYHWASFKDIHTTTGKI

Intron Amino Acid Position:

251

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

71.7

40.1

Major BPS

77.5

0.68

79.6

Major PPT

86.6

0.82

0.7

80.5

31.5

Minor 5ss

38.1

-1.3

3.3

49.5

41.2

Minor BPS

60.4

0.41

1.9

78.66

44.1

Associated Gene:

Gene:

PTDSS1

Ensembl Gene ID:

ENSAPLG00000012776

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023868

139843575 - 139868313

24739

ENSAPLT00000013338

139843651 - 139868313

24663