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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139859385_139861540_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139859385 - 139861540
Intron Length:
2156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
AGTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTGTGAATA
Flanking Amino Acid:
PHPAIWRMVFGLSVLYFLFL
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.8
0.74
0.8
77
36.5
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
56.6
0.2
2.1
75.52
36.2

Associated Gene:

Gene:
PTDSS1
Ensembl Gene ID:
ENSAPLG00000012776
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023868
139843575 - 139868313
24739
ENSAPLT00000013338
139843651 - 139868313
24663