Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139863143_139868134_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139863143 - 139868134

Intron Length:

4992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

AACACTTTGATG

Flanking Amino Acid:

ILSLMAFAFTRDDSVPEENI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

66.6

39.6

Major BPS

0.85

0.9

39.9

Major PPT

86.8

0.83

0.7

84.7

Minor 5ss

31.2

-2.1

3.3

41.1

45.6

Minor BPS

50.6

-0.1

1.4

49.71

38.6

Associated Gene:

Gene:

PTDSS1

Ensembl Gene ID:

ENSAPLG00000012776

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023868

139843575 - 139868313

24739

ENSAPLT00000013338

139843651 - 139868313

24663