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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139869262_139871415_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139869262 - 139871415
Intron Length:
2154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTGTGTTTATTT
Flanking Amino Acid:
PDLNTEILCEDWDDVPPSSA
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77
0.61
0.9
69.7
41.2
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
48.6
-0
2
66.59
45.3

Associated Gene:

Gene:
MTERF3
Ensembl Gene ID:
ENSAPLG00000012750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013292
139868610 - 139884242
15633