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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139871569_139872546_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139871569 - 139872546
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTAATTAAAA
Flanking Amino Acid:
SETLTKLVQLGVDLSQVEKR
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.2
0.7
0.9
77.4
36.7
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
56.9
0.21
1.9
72.42
38.4

Associated Gene:

Gene:
MTERF3
Ensembl Gene ID:
ENSAPLG00000012750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013292
139868610 - 139884242
15633