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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139872737_139878443_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139872737 - 139878443
Intron Length:
5707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGATTTTTATTT
Flanking Amino Acid:
LGEDLEALETRVAYLKSKKF
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
41.9
Major BPS
100
1.24
0.5
100
0
Major PPT
81.2
0.7
0.8
73.6
37
Minor 5ss
49.9
-0
2.8
73.5
43.2
Minor BPS
54.3
0.21
1.5
67.21
38

Associated Gene:

Gene:
MTERF3
Ensembl Gene ID:
ENSAPLG00000012750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013292
139868610 - 139884242
15633