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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139878592_139879854_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139878592 - 139879854
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TTTTCCCTAATT
Flanking Amino Acid:
KNELGLSVKKTKDLVIRLPR
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
76.2
0.59
0.9
69.8
34.1
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
80.3
1.03
1.5
96.93
27.7

Associated Gene:

Gene:
MTERF3
Ensembl Gene ID:
ENSAPLG00000012750
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013292
139868610 - 139884242
15633