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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140028537_140029891_F

Intron Information:

Intron Rank:
140954
Intron Class:
major
Intron Phase:
Intron Coordinates:
140028537 - 140029891
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGGGA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTAAAATTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
62.5
37.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
93.4
0.98
0.5
92.6
17.4
Minor 5ss
22.5
-3.2
3.3
29
43.5
Minor BPS
48.3
-0
2
72.48
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025896
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035495
140028405 - 140031696
3292