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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140029999_140031571_F

Intron Information:

Intron Rank:
140955
Intron Class:
major
Intron Phase:
Intron Coordinates:
140029999 - 140031571
Intron Length:
1573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
CTCCATTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
74.2
0.54
0.9
69.5
36.8
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
48
-0.1
1.7
57.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025896
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035495
140028405 - 140031696
3292