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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140111761_140115639_F

Intron Information:

Intron Rank:
149423
Intron Class:
major
Intron Phase:
Intron Coordinates:
140111761 - 140115639
Intron Length:
3879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATTTTCCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.6
0.82
0.9
86.9
31.1
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
49.5
0.04
1.8
70.76
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030401
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029798
140111572 - 140115816
4245