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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140113531_140115639_F

Intron Information:

Intron Rank:
149425
Intron Class:
major
Intron Phase:
Intron Coordinates:
140113531 - 140115639
Intron Length:
2109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATTAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATTTTCCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
74.6
35.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.6
0.82
0.9
86.9
31.1
Minor 5ss
36.6
-1.5
2.7
46.7
41.8
Minor BPS
49.5
0.04
1.8
70.76
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030401
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042685
140111572 - 140115816
4245