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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140166650_140167808_F

Intron Information:

Intron Rank:
144184
Intron Class:
major
Intron Phase:
Intron Coordinates:
140166650 - 140167808
Intron Length:
1159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATAACCC
5'SS Class:
major
3'SS Sequence:
ATCCAATTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTTCATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.1
51.2
37.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.2
0.43
0.9
62
38.1
Minor 5ss
38.8
-1.3
3.1
48.7
42.4
Minor BPS
70.6
0.64
1.6
79.79
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027724
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028668
140165572 - 140167823
2252