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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140227342_140228714_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140227342 - 140228714
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
GCTTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATTCTTTGATT
Flanking Amino Acid:
CNDSFAKMPPKLKSNSARLT
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.3
0.52
1
69.8
39.6
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
78.4
0.97
1
87.59
31.4

Associated Gene:

Gene:
C8orf37
Ensembl Gene ID:
ENSAPLG00000012602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013124
140224118 - 140232051
7934