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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140228786_140229313_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
140228786 - 140229313
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GAAATCCATATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAAAT
Flanking Amino Acid:
NSAAVQIHRRRCCPVYLGGS
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
55.9
0.13
1
47.9
40.2
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
67.7
0.64
1.5
85.71
33.9

Associated Gene:

Gene:
C8orf37
Ensembl Gene ID:
ENSAPLG00000012602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013124
140224118 - 140232051
7934