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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140256339_140256839_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140256339 - 140256839
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGACTC
5'SS Class:
major
3'SS Sequence:
GTTAATCCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
TTCTGGTTAATC
Flanking Amino Acid:
TGEMTACQSARPSGSSNRGI
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.3
69.9
41.1
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
65.7
0.35
0.9
59.2
37.8
Minor 5ss
31.9
-2.1
3.1
42.6
44.2
Minor BPS
50.9
0.01
2.4
69.44
42.9

Associated Gene:

Gene:
PLEKHF2
Ensembl Gene ID:
ENSAPLG00000011620
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012091
140256292 - 140257521
1230