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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140284110_140285300_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140284110 - 140285300
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TACTTTTTGATT
Flanking Amino Acid:
VVLPMDICMLHGVSQEDFIR
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.9
0.49
0.9
65
41.2
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
65
0.55
1.1
74.45
37.1

Associated Gene:

Gene:
NDUFAF6
Ensembl Gene ID:
ENSAPLG00000008314
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008693
140279718 - 140294955
15238