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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140287720_140290436_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140287720 - 140290436
Intron Length:
2717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAATAC
5'SS Class:
major
3'SS Sequence:
TGATATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTGATA
Flanking Amino Acid:
HQPVAVALWRAVKRHNLTKM
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
65.4
35.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.4
0.68
0.9
77.3
41.3
Minor 5ss
37.1
-1.5
3.1
41.8
45.1
Minor BPS
80.9
0.97
0.9
85.86
25.8

Associated Gene:

Gene:
NDUFAF6
Ensembl Gene ID:
ENSAPLG00000008314
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008693
140279718 - 140294955
15238