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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140291557_140294776_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140291557 - 140294776
Intron Length:
3220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTCTTTTTTATA
Flanking Amino Acid:
GEVQYCAELLRKRDYEGFLC
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
90.6
0.91
0.6
87.5
23
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
59.5
0.29
1.6
69.68
37.1

Associated Gene:

Gene:
NDUFAF6
Ensembl Gene ID:
ENSAPLG00000008314
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008693
140279718 - 140294955
15238