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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140311195_140314810_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140311195 - 140314810
Intron Length:
3616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
ACCATCTAAATT
Flanking Amino Acid:
DEEFHSPGSPRLEAQNEMGQ
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.4
39.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
81.9
0.72
0.8
79.8
32.1
Minor 5ss
37.7
-1.4
3.2
52.9
44.2
Minor BPS
49.4
0.03
1.7
61.8
43

Associated Gene:

Gene:
TP53INP1
Ensembl Gene ID:
ENSAPLG00000008302
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008621
140310263 - 140316060
5798