About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140328930_140329012_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140328930 - 140329012
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CGTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CCTCTCCTAACA
Flanking Amino Acid:
MSRRSSRLQAKQQQ
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
72
0.55
1
71.8
31.4
Major PPT
82.4
0.73
0.8
76.4
32.2
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
55.2
0.16
1.7
64.87
41.6

Associated Gene:

Gene:
CCNE2
Ensembl Gene ID:
ENSAPLG00000007612
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007956
140328891 - 140338699
9809