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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140330662_140332477_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140330662 - 140332477
Intron Length:
1816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTCCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TGCTCTGTAACT
Flanking Amino Acid:
FINPSPLPELNWGNSKDVWL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
74.8
0.56
0.8
70
30.5
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
62.1
0.46
2
80.14
42.2

Associated Gene:

Gene:
CCNE2
Ensembl Gene ID:
ENSAPLG00000007612
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007956
140328891 - 140338699
9809