About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140336541_140337210_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140336541 - 140337210
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AAATCCTCAACT
Flanking Amino Acid:
SQEKFIQIAQLLDLCILDVN
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.8
38.7
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
82.1
0.72
0.8
80.6
31.5
Minor 5ss
30.6
-2.2
3
42
44.7
Minor BPS
71.2
0.74
1.5
81.62
39

Associated Gene:

Gene:
CCNE2
Ensembl Gene ID:
ENSAPLG00000007612
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007956
140328891 - 140338699
9809